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HS vs. Pilonidal Cysts: 5 Differences

Medically reviewed by Paul A. Regan, M.D., FAAD
Written by Sherri Gordon, CLC
Updated on October 1, 2026

Key Takeaways

  • Hidradenitis suppurativa (HS) and pilonidal cysts are two different skin conditions that can look similar but have key differences in where they appear on the body, what causes them, and how they are treated.
  • HS tends to develop in areas where skin rubs together, like the armpits and groin, while pilonidal cysts form almost exclusively near the tailbone. The two conditions also have different risk factors and causes, though they can sometimes occur together and share some features like painful lumps and sinus tracts under the skin.
  • If you notice unusual lumps, pain, or drainage on your skin, talking with a dermatologist can help you get an accurate diagnosis and find a treatment plan that works best for your situation.
  • View all takeaways

It can be easy to confuse hidradenitis suppurativa (HS) with pilonidal cysts, or pockets in the skin that usually contain hair and skin cells and develop near the tailbone. However, they’re different skin conditions that may require different treatments.

Knowing how the two conditions differ, including their symptoms, can help you know when to see your dermatologist. Here are some key differences that can help make sure both conditions are recognized and treated.

1

HS and Pilonidal Cysts Usually Develop in Different Locations

Also known as acne inversa, HS usually occurs in areas where skin rubs together, such as the groin and armpits. These areas can also contain many sweat glands. HS can also develop in areas with thick, coarse hair.

HS can also appear under the breasts, on the inner thighs, and on the buttocks. Less commonly, HS may develop near the ears or around the belly button as well as on the face, back, and neck.

Pilonidal cysts, on the other hand, develop almost exclusively near the tailbone, at the top of the cleft between the buttocks. Unlike HS, pilonidal cysts don’t typically form elsewhere on the body.

Pilonidal cysts develop almost exclusively near the tailbone, at the top of the cleft between the buttocks.

What Does a Pilonidal Cyst Look Like Compared With HS?

HS may first appear as pairs of blackheads (bumps with dark centers) or as pea-sized lumps under the skin. These bumps may last for days to months and can be painful or itchy. Over time, some lumps may get bigger, break open, and drain blood and pus.

Pilonidal cysts can cause lumps under the skin, but you may not notice them at first. The cysts usually develop when hair punctures the skin and becomes embedded, creating a pocket that can fill with hair and dead skin cells.

If this pocket in the skin becomes infected, a pilonidal abscess may form. Symptoms can include swelling, pain, discolored skin, and drainage.

HS bumps can form tunnels under the skin called sinus tracts, which may drain. Pilonidal disease can also form sinus tracts under the skin.

2

HS and Pilonidal Cysts Have Different Causes

The exact cause of HS isn’t fully understood, but an overactive immune system plays a role in the inflammation linked to the condition. This inflammation can cause a mix of sores, changes in skin color, swelling, itching, pain, and drainage.

Researchers aren’t sure exactly what triggers HS, but there may be a genetic link. An estimated 1 in 3 people with HS have a family member with the condition.

Regardless of the cause, it’s important to know that HS isn’t caused by poor hygiene or sexually transmitted infections. It’s not contagious, nor is it an infection, even if bacteria are found in the area.

It’s not known just what triggers pilonidal cysts to form, either. Hair that gets stuck under the skin or becomes ingrown may play a role. Friction and pressure from tight clothing or sitting for long periods may also contribute.

HS and pilonidal cysts are considered separate conditions, but they can occur together. Pilonidal disease frequently happens alongside HS, and both are part of a group of related conditions called the follicular occlusion tetrad. Researchers are continuing to study their connection.

3

HS and Pilonidal Cysts Have Different Risk Factors

It’s possible to have both HS and pilonidal cysts. The conditions share some risk factors but also have some different ones. Here’s how they compare, according to Mayo Clinic and DermNet:

It’s possible to have both HS and pilonidal cysts, but some of their risk factors differ.

Risk factors for HS Risk factors for pilonidal cysts
Being in your teens or 20s, being female, being Black, or having a family history of HS Being in your 20s to 40s; being male; having a family history of pilonidal disease; or having coarse, curly, or thick hair
Having overweight or obesity Having obesity
Having certain other conditions such as arthritis, diabetes, metabolic syndrome, or inflammatory bowel disease Experiencing repeated injury or friction in the affected area
Smoking Sitting for long periods
4

Doctors Look for Different Symptoms When Making a Diagnosis

Both HS and pilonidal cysts can involve lumps under your skin that can become painful, but they tend to look different and occur in different locations. Your dermatologist will look for these differences to help make a diagnosis.

They’ll begin by asking about your medical history, focusing on your family history and other skin conditions. They’ll also perform a thorough examination of the affected skin, noting where the lesions are and what they look like.

Your healthcare provider may also ask when your symptoms first appeared, how long they last, and whether they go away and come back. Keep in mind that no lab tests are designed to diagnose HS or pilonidal cysts.

No lab tests are designed to diagnose HS or pilonidal cysts.

If your lesions are draining, your doctor may take a sample to check for bacteria. For pilonidal cysts, your doctor may also order a CT scan or MRI to look for sinus tracts, especially if surgery is being considered.

5

HS May Be Treated With Biologics

HS and pilonidal cysts have different treatment plans. For instance, HS may be treated with biologics, which target parts of the immune system to reduce inflammation.

Pilonidal cysts aren’t typically treated with biologics. Pilonidal disease is thought to develop when hair becomes embedded in the skin, causing inflammation.

Sometimes, an infected pilonidal cyst needs to be drained, which can often be done in a healthcare provider’s office. If pilonidal disease keeps coming back or is severe, surgery may be needed.

Other treatments, such as phenol injections, may help reduce the incidence of cysts and abscesses. Hair removal may also be recommended to help reduce the risk of pilonidal disease coming back.

Whether you’re treating HS or pilonidal cysts, your healthcare provider can recommend a treatment plan based on your condition and its stage. Together, you can come up with a plan that helps ease your discomfort and addresses your main concerns.

HS vs. Pilonidal Cysts

Key differences Hidradenitis suppurativa Pilonidal cysts
Location Skin folds, such as the armpits, groin, inner thighs, and area under breasts Near the tailbone, at the top of the cleft between the buttocks
Appearance Blackheads, pea-sized lumps, or abscesses that may drain Lumps or pockets under the skin that may become painful and drain
Causes Not fully understood; an overactive immune system and genetics may play a role Not fully understood; hair that becomes embedded under the skin may play a role
Risk factors Being female; being in your teens or 20s; being Black; smoking; having obesity; or having certain conditions, such as diabetes or arthritis Being male, being in your 20s, having obesity, having coarse or thick hair, or sitting for long periods
Diagnosis Medical history and physical exam based on the location and appearance of lesions Medical history and physical exam based on the location and appearance of the cyst or other symptoms
Treatment Medications, including biologics, and surgery in some cases Drainage or surgery in some cases
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A myHSteam Member

OMG I can so relate. I am 74. Have dealt with HS since age 5. But was not diagnosed until I was 40. Nobody could diagnose it until I met a lovely old doctor that took one look and said HS. I had so… read more

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